It also shows a progress bar on the right side for long-running processes:Ī single mouse click on the status bar will show the information about ImageJ and Java version as well as about memory consumption: The status bar displays useful information at startup, and when running plugins. a circular brush selection tool which shares the icon with the ellipse selection tool). If there is a small red arrow in the lower right corner of the tool icon, you can right-click ( ⌃ Ctrl + Left Click on an Apple mouse) and select an alternative selection tool (e.g. This example shows the option dialog of the Oval Tool: Some tools offer option dialogs which you can open by double clicking the icon. By clicking on the icon, you activate the tool. The toolbar mostly contains selection tools: the rectangle, ellipse, polygon, freehand and straight line selection tool. In the menu bar, you will find most of the functionality, such as loading/saving files, processing them, and plugins will be installed into the menus, too. These buttons can be used to take alternative actions (beyond just running a given command) such as opening the plugin’s source or wiki page. The details panel provides more information about the selected search result. button opens a panel with more options for controlling your search behavior. Results can be navigated with the mouse or arrow keys, and the highlighted command can be executed with ↵ Enter or double-clicking.Ĭategories can be (de)selected as desired to expand or restrict the scope of your search, as desired. These are the plugins/commands that match your search query, sorted by type of result. The search panel can be brought up by clicking and typing into the search bar, or via the keyboard shortcut ⌃ Ctrl / ⌘ ⌃ Ctrl on a PC ⌘ command on a Mac + L The search bar is a convenient way to quickly find and launch commands, search for documentation, and more. The original version of ImageJ does not have a search bar, but you can bring up the Command Finder, with some similar capabilities, by pressing the same keyboard shortcut: ⌃ Ctrl / ⌘ ⌃ Ctrl on a PC ⌘ command on a Mac + L On macOS, the menu bar will appear on the top of the screen (as with all macOS applications). How do I get started? Installationįirst, you should to download and install ImageJ, ImageJ2, or Fiji! The main windowĪfter starting the program, you will see the main window: ImageJ’s extensibility is the root of its effectiveness: many advanced image-processing methods are not provided by the core application, but rather are plugins written by specialists in specific fields, made available via ImageJ2 update sites. Image processing, colocalization, deconvolution, registration, segmentation, tracking, visualization and much more.Ī powerful mechanism for extending ImageJ in all kinds of useful ways.Īutomated, reproducible workflows via scripts and macros.Ī vibrant, diverse, and helpful user community. What does ImageJ provide? ApplicationĪ user interface with functions to load, display, and save images. What is Fiji?įiji Is Just ImageJ-a “batteries-included” distribution of ImageJ and ImageJ2 which includes many useful plugins contributed by the community. It includes some additional features not available in the original ImageJ. ImageJ2 is a new version of ImageJ for multidimensional image data, with a focus on scientific imaging. ImageJ is public domain software for processing and analyzing scientific images.
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